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*[http://orgmode.org Org mode] - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system | *[http://orgmode.org Org mode] - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system | ||
*[http://hal.inria.fr/inria-00436029 open source cTuning technology] - towards collaborative and reproducible performance autotuning via public repository of optimization knowledge, crowdsourcing, machine learning and collective intelligence (2006-cur.) | *[http://hal.inria.fr/inria-00436029 open source cTuning technology] - towards collaborative and reproducible performance autotuning via public repository of optimization knowledge, crowdsourcing, machine learning and collective intelligence (2006-cur.) | ||
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| + | === '''Collective Knowledge Framework'''<br/> === | ||
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*[http://github.com/ctuning/ck Collective Knowledge Technology] - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub | *[http://github.com/ctuning/ck Collective Knowledge Technology] - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub | ||
**[http://cknowledge.org/repo CK-based interactive article] | **[http://cknowledge.org/repo CK-based interactive article] | ||
Revision as of 03:34, 26 October 2015
Assorted (offline and online) tools
- Docker tool - pack, ship and run applications as a lightweight container
- VirtualBox - create VM images
- OCCAM - open curation for computer architecture modeling
- ReproZip - automatically packing experiments (related article)
- CARE tool - Comprehensive Archiver for Reproducible Execution
- RR - Mozilla project: records nondeterministic executions and debugs them deterministically
- CDE tool - automatically create portable Linux applications with all dependencies
- IPython Notebook - a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document
- R-studio - open source and enterprise-ready professional software for R
- Codelab - an experimental platform for collaboration and competition
- Grid5000 - large-scale and versatile testbed for experiment-driven research in all areas of computer science, with a focus on parallel and distributed computing including Cloud, HPC and Big Data
- MyGrid - develops a suite of tools designed to "help e-Scientists get on with science and get on with scientists"
- FigShare - managing research in a cloud
- RunMyCode - online workflows
- AptLab - online workflows
- Taverna - designing and executing workflows
- BOINC - open-source software for volunteer computing and grid computing
- NGS pipelines - integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq
- SEEK for Science - finding, sharing and exchanging Data, Models, Simulations and Processes in Science
- Skoll - a process & Infrastructure for Distributed, continuous Quality assurance
- NEPI - simplifying network experimentation
- Burrito - rethinking the Electronic Lab Notebook
- Org mode - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system
- open source cTuning technology - towards collaborative and reproducible performance autotuning via public repository of optimization knowledge, crowdsourcing, machine learning and collective intelligence (2006-cur.)
Collective Knowledge Framework
- Collective Knowledge Technology - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub
