CARE tool - Comprehensive Archiver for Reproducible Execution
RR - Mozilla project: records nondeterministic executions and debugs them deterministically
CDE tool - automatically create portable Linux applications with all dependencies
IPython Notebook - a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document
R-studio - open source and enterprise-ready professional software for R
Codelab - an experimental platform for collaboration and competition
Grid5000 - large-scale and versatile testbed for experiment-driven research in all areas of computer science, with a focus on parallel and distributed computing including Cloud, HPC and Big Data
MyGrid - develops a suite of tools designed to "help e-Scientists get on with science and get on with scientists"
BOINC - open-source software for volunteer computing and grid computing
NGS pipelines - integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq
SEEK for Science - finding, sharing and exchanging Data, Models, Simulations and Processes in Science
Skoll - a process & Infrastructure for Distributed, continuous Quality assurance
Org mode - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system
open source cTuning technology - towards collaborative and reproducible performance autotuning via public repository of optimization knowledge, crowdsourcing, machine learning and collective intelligence (2006-cur.)
Collective Knowledge Framework
Collective Knowledge Framework - tiny, open source, python application (~200Kb) to help researchers decompose their ad-hoc experimental workflows, benchmarks, data sets, scripts and VM/Docker images into reusable and customizable components with Python wrappers and unified JSON API while using already installed and possibly proprietary tools, benchmarks and data sets:
