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[ '''''[[Reproducibility|Back to main page]]''''' ] | [ '''''[[Reproducibility|Back to main page]]''''' ] | ||
| − | === '''Assorted tools'''<br/> === | + | === '''Assorted (offline and online) tools'''<br/> === |
*[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | *[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | ||
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*[https://www.codalab.org Codelab] (an experimental platform for collaboration and competition) | *[https://www.codalab.org Codelab] (an experimental platform for collaboration and competition) | ||
*[http://figshare.com FigShare] (managing research in a cloud) | *[http://figshare.com FigShare] (managing research in a cloud) | ||
| + | *[http://www.runmycode.org RunMyCode] (online workflows) | ||
| + | *[https://www.aptlab.net AptLab] (online workflows) | ||
*[http://www.taverna.org.uk Taverna] (designing and executing workflows) | *[http://www.taverna.org.uk Taverna] (designing and executing workflows) | ||
*[http://boinc.berkeley.edu BOINC] (open-source software for volunteer computing and grid computing) | *[http://boinc.berkeley.edu BOINC] (open-source software for volunteer computing and grid computing) | ||
Revision as of 12:14, 5 February 2015
Assorted (offline and online) tools
- CARE tool from STMicroelectronics (Comprehensive Archiver for Reproducible Execution)
- RR (Mozilla project: records nondeterministic executions and debugs them deterministically)
- CDE tool (automatically create portable Linux applications with all dependencies)
- Docker tool (pack, ship and run applications as a lightweight container)
- IPython Notebook (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document)
- R-studio (Open source and enterprise-ready professional software for R)
- Codelab (an experimental platform for collaboration and competition)
- FigShare (managing research in a cloud)
- RunMyCode (online workflows)
- AptLab (online workflows)
- Taverna (designing and executing workflows)
- BOINC (open-source software for volunteer computing and grid computing)
- NGS pipelines (integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq)
- Skoll (A process & Infrastructure for Distributed, continuous Quality assurance)
- NEPI (Simplifying network experimentation)
- Burrito (Rethinking the Electronic Lab Notebook)
open source cTuning technology (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.) - Collective Mind technology (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014)
- Collective Knowledge framework and repository (preserve, organize, desribe, share and reuse your code and data via GIT(HUB)) (2014-cur.)
