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[ '''''[[Reproducibility|Back to main page]]''''' ]
 
[ '''''[[Reproducibility|Back to main page]]''''' ]
  
=== '''Assorted tools'''<br/> ===
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=== '''Assorted (offline and online) tools'''<br/> ===
  
 
*[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution)
 
*[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution)
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*[https://www.codalab.org Codelab] (an experimental platform for collaboration and competition)
 
*[https://www.codalab.org Codelab] (an experimental platform for collaboration and competition)
 
*[http://figshare.com FigShare] (managing research in a cloud)
 
*[http://figshare.com FigShare] (managing research in a cloud)
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*[http://www.runmycode.org RunMyCode] (online workflows)
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*[https://www.aptlab.net AptLab] (online workflows)
 
*[http://www.taverna.org.uk Taverna] (designing and executing workflows)
 
*[http://www.taverna.org.uk Taverna] (designing and executing workflows)
 
*[http://boinc.berkeley.edu BOINC] (open-source software for volunteer computing and grid computing)
 
*[http://boinc.berkeley.edu BOINC] (open-source software for volunteer computing and grid computing)

Revision as of 12:14, 5 February 2015

[ Back to main page ]

Assorted (offline and online) tools

  • CARE tool from STMicroelectronics (Comprehensive Archiver for Reproducible Execution)
  • RR (Mozilla project: records nondeterministic executions and debugs them deterministically)
  • CDE tool (automatically create portable Linux applications with all dependencies)
  • Docker tool (pack, ship and run applications as a lightweight container)
  • IPython Notebook (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document)
  • R-studio (Open source and enterprise-ready professional software for R)
  • Codelab (an experimental platform for collaboration and competition)
  • FigShare (managing research in a cloud)
  • RunMyCode (online workflows)
  • AptLab (online workflows)
  • Taverna (designing and executing workflows)
  • BOINC (open-source software for volunteer computing and grid computing)
  • NGS pipelines (integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq)
  • Skoll (A process & Infrastructure for Distributed, continuous Quality assurance)
  • NEPI (Simplifying network experimentation)
  • Burrito (Rethinking the Electronic Lab Notebook)
    open source cTuning technology (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.)
  • Collective Mind technology (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014)
  • Collective Knowledge framework and repository (preserve, organize, desribe, share and reuse your code and data via GIT(HUB)) (2014-cur.)

(C) 2011-2014 cTuning foundation