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| − | [ '''''[[Reproducibility|Back to main page]]''''' ]
| + | Moved to [https://github.com/ctuning/ck/wiki/Enabling-open-science-tools GitHub]. |
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| − | === '''Assorted (offline and online) tools'''<br/> ===
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| − | *[https://www.docker.io Docker tool] - pack, ship and run applications as a lightweight container
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| − | *[http://www.virtualbox.org VirtualBox] - create VM images
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| − | *[http://www.occamportal.org OCCAM] - open curation for computer architecture modeling
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| − | *[http://vida-nyu.github.io/reprozip ReproZip] - automatically packing experiments ([https://www.usenix.org/conference/tapp13/technical-sessions/presentation/chirigati related article])
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| − | *[http://reproducible.io CARE tool] - Comprehensive Archiver for Reproducible Execution
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| − | *[http://rr-project.org RR] - Mozilla project: records nondeterministic executions and debugs them deterministically
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| − | *[http://www.pgbovine.net/cde.html CDE tool] - automatically create portable Linux applications with all dependencies
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| − | *[http://ipython.org/notebook.html IPython Notebook] - a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document
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| − | *[http://www.rstudio.com R-studio] - open source and enterprise-ready professional software for R
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| − | *[https://www.codalab.org Codelab] - an experimental platform for collaboration and competition
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| − | *[https://www.grid5000.fr Grid5000] - large-scale and versatile testbed for experiment-driven research in all areas of computer science, with a focus on parallel and distributed computing including Cloud, HPC and Big Data
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| − | *[http://www.mygrid.org.uk MyGrid] - develops a suite of tools designed to "help e-Scientists get on with science and get on with scientists"
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| − | *[http://figshare.com FigShare] - managing research in a cloud
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| − | *[http://www.runmycode.org RunMyCode] - online workflows
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| − | *[https://www.aptlab.net AptLab] - online workflows
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| − | *[http://www.taverna.org.uk Taverna] - designing and executing workflows
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| − | *[http://boinc.berkeley.edu BOINC] - open-source software for volunteer computing and grid computing
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| − | *[https://mulcyber.toulouse.inra.fr/projects/ngspipelines NGS pipelines] - integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq
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| − | *[http://www.seek4science.org SEEK for Science] - finding, sharing and exchanging Data, Models, Simulations and Processes in Science
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| − | *[http://www.cs.umd.edu/projects/skoll/Skoll/Home.html Skoll] - a process & Infrastructure for Distributed, continuous Quality assurance
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| − | *[http://nepi.inria.fr NEPI] - simplifying network experimentation
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| − | *[http://pgbovine.net/burrito.html Burrito] - rethinking the Electronic Lab Notebook
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| − | *[http://orgmode.org Org mode] - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system
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| − | *[http://hal.inria.fr/inria-00436029 open source cTuning technology] - towards collaborative and reproducible performance autotuning via public repository of optimization knowledge, crowdsourcing, machine learning and collective intelligence (2006-cur.)
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| − | === '''Collective Knowledge Framework'''<br/> ===
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| − | *[http://github.com/ctuning/ck Collective Knowledge Technology] - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub
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| − | **[http://cknowledge.org/repo CK-based interactive article]
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| − | **[http://github.com/ctuning/reproduce-clsmith PLDI'15 artifact converted to CK format]
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| − | **[http://github.com/ctuning/reproduce-pamela-project Artifact repository for UK PAMELA project]
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| − | **[http://github.com/ctuning/reproduce-carp-project Artifact repository for EU FP7 CARP project]
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| − | **[http://github.com/ctuning/ctuning-programs Example of benchmarks shared in CK format]
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| − | **[http://github.com/ctuning/ctuning-datasets-min Example of data sets shared in CK format]
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| − | **[https://drive.google.com/folderview?id=0B-wXENVfIO82dzYwaUNIVElxaGc&usp=sharing Examples of CK repositories shared as zip files]
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