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=== '''Assorted (offline and online) tools'''<br/> === | === '''Assorted (offline and online) tools'''<br/> === | ||
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*[https://www.docker.io Docker tool] (pack, ship and run applications as a lightweight container) | *[https://www.docker.io Docker tool] (pack, ship and run applications as a lightweight container) | ||
| + | *[http://www.virtualbox.org] (create VM images) | ||
| + | *[http://www.occamportal.org OCCAM] - open curation for computer architecture modeling | ||
*[http://vida-nyu.github.io/reprozip ReproZip] automatically packing experiments ([https://www.usenix.org/conference/tapp13/technical-sessions/presentation/chirigati related article]) | *[http://vida-nyu.github.io/reprozip ReproZip] automatically packing experiments ([https://www.usenix.org/conference/tapp13/technical-sessions/presentation/chirigati related article]) | ||
*[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | *[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | ||
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*[http://pgbovine.net/burrito.html Burrito] (Rethinking the Electronic Lab Notebook)<br/>[http://hal.inria.fr/inria-00436029 open source cTuning technology] (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.) | *[http://pgbovine.net/burrito.html Burrito] (Rethinking the Electronic Lab Notebook)<br/>[http://hal.inria.fr/inria-00436029 open source cTuning technology] (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.) | ||
*[http://c-mind.org/repo Collective Mind technology] (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014) | *[http://c-mind.org/repo Collective Mind technology] (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014) | ||
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*[http://orgmode.org Org mode] - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system | *[http://orgmode.org Org mode] - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system | ||
| + | *[http://github.com/ctuning/ck Collective Knowledge Technology] - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub | ||
| + | **[http://cknowledge.org/repo CK-based interactive article] | ||
| + | **[http://github.com/ctuning/reproduce-clsmith PLDI'15 artifact converted to CK format] | ||
| + | **[http://github.com/ctuning/reproduce-pamela-project Artifact repository for UK PAMELA project] | ||
| + | **[http://github.com/ctuning/reproduce-carp-project Artifact repository for EU FP7 CARP project] | ||
| + | **[http://github.com/ctuning/ctuning-programs Example of benchmarks shared in CK format] | ||
| + | **[http://github.com/ctuning/ctuning-datasets-min Example of data sets shared in CK format] | ||
| + | **[https://drive.google.com/folderview?id=0B-wXENVfIO82dzYwaUNIVElxaGc&usp=sharing Examples of CK repositories shared as zip files] | ||
Revision as of 16:54, 25 October 2015
Assorted (offline and online) tools
- Docker tool (pack, ship and run applications as a lightweight container)
- [1] (create VM images)
- OCCAM - open curation for computer architecture modeling
- ReproZip automatically packing experiments (related article)
- CARE tool from STMicroelectronics (Comprehensive Archiver for Reproducible Execution)
- RR (Mozilla project: records nondeterministic executions and debugs them deterministically)
- CDE tool (automatically create portable Linux applications with all dependencies)
- IPython Notebook (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document)
- R-studio (Open source and enterprise-ready professional software for R)
- Codelab (an experimental platform for collaboration and competition)
- Grid5000 large-scale and versatile testbed for experiment-driven research in all areas of computer science, with a focus on parallel and distributed computing including Cloud, HPC and Big Data
- MyGrid - develops a suite of tools designed to "help e-Scientists get on with science and get on with scientists"
- FigShare (managing research in a cloud)
- RunMyCode (online workflows)
- AptLab (online workflows)
- Taverna (designing and executing workflows)
- BOINC (open-source software for volunteer computing and grid computing)
- NGS pipelines (integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq)
- SEEK for Science - finding, sharing and exchanging Data, Models, Simulations and Processes in Science
- Skoll (A process & Infrastructure for Distributed, continuous Quality assurance)
- NEPI (Simplifying network experimentation)
- Burrito (Rethinking the Electronic Lab Notebook)
open source cTuning technology (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.) - Collective Mind technology (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014)
- Org mode - keeping notes, maintaining TODO lists, planning projects, and authoring documents with a fast and effective plain-text system
- Collective Knowledge Technology - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub
