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**[http://github.com/ctuning/ctuning-datasets-min Example of data sets shared in CK format] | **[http://github.com/ctuning/ctuning-datasets-min Example of data sets shared in CK format] | ||
**[https://drive.google.com/folderview?id=0B-wXENVfIO82dzYwaUNIVElxaGc&usp=sharing Examples of CK repositories shared as zip files] | **[https://drive.google.com/folderview?id=0B-wXENVfIO82dzYwaUNIVElxaGc&usp=sharing Examples of CK repositories shared as zip files] | ||
| + | *[https://www.docker.io Docker tool] (pack, ship and run applications as a lightweight container) | ||
| + | *[http://vida-nyu.github.io/reprozip ReproZip] automatically packing experiments ([https://www.usenix.org/conference/tapp13/technical-sessions/presentation/chirigati related article]) | ||
*[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | *[http://reproducible.io CARE tool from STMicroelectronics] (Comprehensive Archiver for Reproducible Execution) | ||
*[http://rr-project.org RR] (Mozilla project: records nondeterministic executions and debugs them deterministically) | *[http://rr-project.org RR] (Mozilla project: records nondeterministic executions and debugs them deterministically) | ||
*[http://www.pgbovine.net/cde.html CDE tool] (automatically create portable Linux applications with all dependencies) | *[http://www.pgbovine.net/cde.html CDE tool] (automatically create portable Linux applications with all dependencies) | ||
| − | |||
*[http://ipython.org/notebook.html IPython Notebook] (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document) | *[http://ipython.org/notebook.html IPython Notebook] (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document) | ||
*[http://www.rstudio.com R-studio] (Open source and enterprise-ready professional software for R) | *[http://www.rstudio.com R-studio] (Open source and enterprise-ready professional software for R) | ||
Revision as of 15:24, 24 September 2015
Assorted (offline and online) tools
- Collective Knowledge - preserve (with distributed ID), organize, desribe, share and reuse your code and data via GitHub
- Docker tool (pack, ship and run applications as a lightweight container)
- ReproZip automatically packing experiments (related article)
- CARE tool from STMicroelectronics (Comprehensive Archiver for Reproducible Execution)
- RR (Mozilla project: records nondeterministic executions and debugs them deterministically)
- CDE tool (automatically create portable Linux applications with all dependencies)
- IPython Notebook (a web-based interactive computational environment where you can combine code execution, text, mathematics, plots and rich media into a single document)
- R-studio (Open source and enterprise-ready professional software for R)
- Codelab (an experimental platform for collaboration and competition)
- FigShare (managing research in a cloud)
- RunMyCode (online workflows)
- AptLab (online workflows)
- Taverna (designing and executing workflows)
- BOINC (open-source software for volunteer computing and grid computing)
- NGS pipelines (integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNAseq, sRNAseq, ChipSeq, BS-seq)
- Skoll (A process & Infrastructure for Distributed, continuous Quality assurance)
- NEPI (Simplifying network experimentation)
- Burrito (Rethinking the Electronic Lab Notebook)
open source cTuning technology (crowdsource auto-tuning and combine with machine learning using big data, predictive analytics and crowdsourcing) (2006-cur.) - Collective Mind technology (towards collaborative, systematic and reproducible computer engineering using big data, predictive analytics and collective intelligence) (2011-2014)
- OCCAM project - open curation for computer architecture modeling
